PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013479.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 411aa    MW: 42940.1 Da    PI: 8.1466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013479.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13339384655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Do013479.1 339 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 384
                 689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16336395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-13337388No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15338392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MYGSPVPKDL NLPAAQPQPT GAGARTPPPP PQMSSPGLLR YRSAPSTLLG EMMCGDQDFP  60
AAAAAAGAAG HGGPDHHAAA DNVLARFLAG HHAEIPDCKP PRPAAAAHFM EDAASMAASQ  120
QQQQLMYQSQ QQQMAAMEGL YRNVSSGGTE HGATVGAGNN LLRQSSSPAG FLNHLNMDNG  180
YGNILRAGMA GGFRNGVSDA RLEGQLSFSS RQGSVMSQIS EVGSEELDGG SSPEAAGSNG  240
AHPRGGYSGI PGYPMGGAWT DEPSPTSPGA KRPRDSGGAA PQNGQPQPLA PQLSLPGGNN  300
GVGKQASAEM AVIEKFLQFQ DAVPCKIRAK RGCATHPRSI AERVRRTKIS ERIRKLQELV  360
PNMEKQTNTA DMLDLAVDYI KDLQKQVKVL NDGRASCTCS AGKLLQNQFS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957179.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLK3ZU000.0K3ZU00_SETIT; Uncharacterized protein
STRINGGRMZM2G085467_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-50bHLH family protein